All Classes and Interfaces
Class
Description
One source that could not be registered, with a user-readable reason (e.g.
One source that could not be registered, with a user-readable reason (e.g.
Progress heartbeat for an in-flight "add_source" action: one emitted per
source as the walk registers it.
Progress heartbeat for an in-flight "add_source" action: one emitted per
source as the walk registers it.
Request body for the "add_source" Flight action: register an existing path
(or remote URL) on the SERVER's filesystem as a served source at runtime and
start serving it.
Request body for the "add_source" Flight action: register an existing path
(or remote URL) on the SERVER's filesystem as a served source at runtime and
start serving it.
Terminal message of the "add_source" stream: the tally of what happened.
Terminal message of the "add_source" stream: the tally of what happened.
One message in the "add_source" action's result stream: zero or more
`progress` heartbeats followed by exactly one terminal `result`.
One message in the "add_source" action's result stream: zero or more
`progress` heartbeats followed by exactly one terminal `result`.
An argument or a result: pixels, or anything else as JSON.
An argument or a result: pixels, or anything else as JSON.
A binary stream
A binary stream
Data endianness.
One call of one op.
One call of one op.
A read-only SQL query against the server's public catalog (the `catalog`
flight), carried in a TensorTicket so DoGet answers it in one call.
A read-only SQL query against the server's public catalog (the `catalog`
flight), carried in a TensorTicket so DoGet answers it in one call.
Encoded into FlightEndpoint.app_metadata bytes
Describes chunk bounds so client can map array coords to cached chunks
Encoded into FlightEndpoint.app_metadata bytes
Describes chunk bounds so client can map array coords to cached chunks
Describes a data source containing one or more tensors.
Describes a data source containing one or more tensors.
A simple ellipse object.
A simple ellipse object.
One step of a call.
One step of a call.
The GetFlightInfo command.
The GetFlightInfo command.
Owns one Flight connection's allocator, authentication and error boundary.
Additional annotation of the image, which may be used for the analysis.
Additional annotation of the image, which may be used for the analysis.
Protobuf type
biopb.image.ImageDataProtobuf type
biopb.image.ImageDataThe tensor id, slice, scale, or another read parameter is invalid.
Parse a tensor-server location string into an Arrow Flight
Location.
The Mask ROI shape is a link to a BinData object that is a BIT mask drawn on
top of the image as an ROI.
The Mask ROI shape is a link to a BinData object that is a BIT mask drawn on
top of the image as an ROI.
A closed 3D shape repesented by triangular meshes.
A closed 3D shape repesented by triangular meshes.
A trangle defined three indices of the verts array
A trangle defined three indices of the verts array
Protobuf type
biopb.image.OpInfoProtobuf type
biopb.image.OpInfo
How the tensor arguments arrive: EAGER (numpy, fully materialized), LAZY
(dask, may stay out-of-core), or BLOCKS (mapped over blocks -- see
TensorArg.mapped).
Protobuf type
biopb.image.OpListProtobuf type
biopb.image.OpList
A server of named ops over tensors and JSON.
A server of named ops over tensors and JSON.
A stub to allow clients to do synchronous rpc calls to service Ops.
A stub to allow clients to do ListenableFuture-style rpc calls to service Ops.
Base class for the server implementation of the service Ops.
A stub to allow clients to do asynchronous rpc calls to service Ops.
The Pixels element represent generic 5D pixel data.
The Pixels element represent generic 5D pixel data.
///////////
ROI classes are desgined roughly after OME-XML's related datatypes, but with
a emphasis on 3D data
///////////
ROI classes are desgined roughly after OME-XML's related datatypes, but with
a emphasis on 3D data
The Polygon defines closed shapes formed of straight lines.
The Polygon defines closed shapes formed of straight lines.
An OPEN path of straight segments: the freehand / scribble annotation.
An OPEN path of straight segments: the freehand / scribble annotation.
FlightDescriptor.command bytes of a DoPut; what the stream carries is the
oneof arm.
FlightDescriptor.command bytes of a DoPut; what the stream carries is the
oneof arm.
One resolution level of a tensor's server-advertised pyramid.
One resolution level of a tensor's server-advertised pyramid.
A simple rectangle object.
A simple rectangle object.
Request body for the "remove_source" Flight action: deregister a drag-dropped
source branch at runtime.
Request body for the "remove_source" Flight action: deregister a drag-dropped
source branch at runtime.
Terminal (single, non-streamed) result of the "remove_source" action.
Terminal (single, non-streamed) result of the "remove_source" action.
Progress heartbeat for an in-flight "resolve" Flight action.
Progress heartbeat for an in-flight "resolve" Flight action.
One message in the "resolve" action's result stream.
One message in the "resolve" action's result stream.
A three dimensional 'Region of Interest'.
A three dimensional 'Region of Interest'.
One annotation: a geometry, where it sits, and what the user called it.
One annotation: a geometry, where it sits, and what the user called it.
One annotation that lost a conditional write.
One annotation that lost a conditional write.
Delete the streamed `roi_id`s; with an empty stream, every annotation on
`array_id` in `set_name` (or every annotation on the tensor when `set_name`
is empty too).
Delete the streamed `roi_id`s; with an empty stream, every annotation on
`array_id` in `set_name` (or every annotation on the tensor when `set_name`
is empty too).
Protobuf type
biopb.image.RoiDeleteResultProtobuf type
biopb.image.RoiDeleteResultProtobuf type
biopb.image.RoiListResultProtobuf type
biopb.image.RoiListResult
Body of the "roi_prune" action: annotations whose source the catalog has not
seen for `unseen_days`.
Body of the "roi_prune" action: annotations whose source the catalog has not
seen for `unseen_days`.
Protobuf type
biopb.image.RoiPruneResultProtobuf type
biopb.image.RoiPruneResult
Create-or-update a batch of annotations, applied in one transaction.
Create-or-update a batch of annotations, applied in one transaction.
Protobuf type
biopb.image.RoiPutResultProtobuf type
biopb.image.RoiPutResult
A tensor's annotations, as rows of the ROI row schema (biopb.image).
A tensor's annotations, as rows of the ROI row schema (biopb.image).
One annotation layer on a tensor, for a client listing what is there.
One annotation layer on a tensor, for a client listing what is there.
One tensor's annotations whose source the catalog has not seen.
One tensor's annotations whose source the catalog has not seen.
SerializableTensorImg<T extends net.imglib2.type.NativeType<T> & net.imglib2.type.numeric.RealType<T>>
Deprecated.
A tensor handed across processes: the answer a GetFlightInfo gave, and the
connection facts to act on it.
A tensor handed across processes: the answer a GetFlightInfo gave, and the
connection facts to act on it.
Body of the `set_upload_status` action: move an upload along its ladder.
Body of the `set_upload_status` action: move an upload along its ladder.
Specifies a sub-region of the tensor for filtered endpoint discovery
Specifies a sub-region of the tensor for filtered endpoint discovery
The source must be resolved explicitly before it can be described or read.
A held read plan names changed content; request a new FlightInfo plan.
Generic nd tensor
Generic nd tensor
A tensor argument's contract.
A tensor argument's contract.
Encoded into FlightDescriptor.cmd bytes (identifies the tensor)
Encoded into FlightDescriptor.cmd bytes (identifies the tensor)
Decodes the typed payload a tensor-server Flight error carries.
Client for accessing tensors from a TensorFlightServer.
Per-dimension physical pixel size + unit for a tensor, as returned by
TensorFlightClient.getPhysicalScale(java.lang.String).Base class for a tensor-server error that carried a validated typed payload.
The requested source, tensor field, or chunk no longer exists.
Raised when a caller stops consuming a long-running tensor server operation.
Tensor read request: the `data` flight's GetFlightInfo command.
Tensor read request: the `data` flight's GetFlightInfo command.
Encoded into FlightEndpoint.ticket bytes; what DoGet serves is the oneof arm.
Encoded into FlightEndpoint.ticket bytes; what DoGet serves is the oneof arm.
A chunk write or finish reached an upload that is already terminal.
How far the upload backing a tensor has got.
How far the upload backing a tensor has got.
One gate, and one way out.
Progress for an in-flight "warm" (hydrate-ahead) Flight action.
Progress for an in-flight "warm" (hydrate-ahead) Flight action.
One message in the "warm" action's result stream.
One message in the "warm" action's result stream.