Package biopb.tensor

Class DataSourceDescriptor

java.lang.Object

com.google.protobuf.AbstractMessageLite

com.google.protobuf.AbstractMessage

com.google.protobuf.GeneratedMessageV3

biopb.tensor.DataSourceDescriptor

All Implemented Interfaces:

DataSourceDescriptorOrBuilder, com.google.protobuf.Message, com.google.protobuf.MessageLite, com.google.protobuf.MessageLiteOrBuilder, com.google.protobuf.MessageOrBuilder, Serializable

public final class DataSourceDescriptor
extends com.google.protobuf.GeneratedMessageV3
implements DataSourceDescriptorOrBuilder

 Describes a data source containing one or more tensors.
 Used in ListFlights response to provide full tensor metadata upfront.
 Enables multifield support where tensors within a source have different shapes.
 

Protobuf type biopb.tensor.DataSourceDescriptor

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	DataSourceDescriptor.Builder	Describes a data source containing one or more tensors.

Nested classes/interfaces inherited from class com.google.protobuf.GeneratedMessageV3

com.google.protobuf.GeneratedMessageV3.BuilderParent, com.google.protobuf.GeneratedMessageV3.ExtendableBuilder<MessageT extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage<MessageT>,BuilderT extends com.google.protobuf.GeneratedMessageV3.ExtendableBuilder<MessageT,BuilderT>>, com.google.protobuf.GeneratedMessageV3.ExtendableMessage<MessageT extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage<MessageT>>, com.google.protobuf.GeneratedMessageV3.ExtendableMessageOrBuilder<MessageT extends com.google.protobuf.GeneratedMessageV3.ExtendableMessage<MessageT>>, com.google.protobuf.GeneratedMessageV3.FieldAccessorTable, com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter

Nested classes/interfaces inherited from class com.google.protobuf.AbstractMessageLite

com.google.protobuf.AbstractMessageLite.InternalOneOfEnum

Field Summary

Fields

Modifier and Type	Field	Description
static final int	DATA_RESIDENT_FIELD_NUMBER
static final int	METADATA_JSON_FIELD_NUMBER
static final int	SOURCE_ID_FIELD_NUMBER
static final int	SOURCE_TYPE_FIELD_NUMBER
static final int	SOURCE_URL_FIELD_NUMBER
static final int	TENSORS_FIELD_NUMBER

Fields inherited from class com.google.protobuf.GeneratedMessageV3

alwaysUseFieldBuilders, unknownFields

Fields inherited from class com.google.protobuf.AbstractMessage

memoizedSize

Fields inherited from class com.google.protobuf.AbstractMessageLite

memoizedHashCode

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object obj)
boolean	getDataResident()	Advisory, point-in-time hint: this source's content is local and cheap to read right now.
static DataSourceDescriptor	getDefaultInstance()
DataSourceDescriptor	getDefaultInstanceForType()
static final com.google.protobuf.Descriptors.Descriptor	getDescriptor()
String	getMetadataJson()	Source-level OME/vendor metadata (JSON format)
com.google.protobuf.ByteString	getMetadataJsonBytes()	Source-level OME/vendor metadata (JSON format)
com.google.protobuf.Parser<DataSourceDescriptor>	getParserForType()
int	getSerializedSize()
String	getSourceId()	Unique identifier for the data source (flight identifier)
com.google.protobuf.ByteString	getSourceIdBytes()	Unique identifier for the data source (flight identifier)
String	getSourceType()	Source type: "aics", "micromanager", "ome-zarr", "zarr", "hdf5", etc.
com.google.protobuf.ByteString	getSourceTypeBytes()	Source type: "aics", "micromanager", "ome-zarr", "zarr", "hdf5", etc.
String	getSourceUrl()	File path, directory, or remote URL
com.google.protobuf.ByteString	getSourceUrlBytes()	File path, directory, or remote URL
TensorDescriptor	getTensors(int index)	All tensor descriptors in this source metadata_json field not populated here (source-level metadata only)
int	getTensorsCount()	All tensor descriptors in this source metadata_json field not populated here (source-level metadata only)
List<TensorDescriptor>	getTensorsList()	All tensor descriptors in this source metadata_json field not populated here (source-level metadata only)
TensorDescriptorOrBuilder	getTensorsOrBuilder(int index)	All tensor descriptors in this source metadata_json field not populated here (source-level metadata only)
List<? extends TensorDescriptorOrBuilder>	getTensorsOrBuilderList()	All tensor descriptors in this source metadata_json field not populated here (source-level metadata only)
boolean	hasDataResident()	Advisory, point-in-time hint: this source's content is local and cheap to read right now.
int	hashCode()
protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable	internalGetFieldAccessorTable()
final boolean	isInitialized()
static DataSourceDescriptor.Builder	newBuilder()
static DataSourceDescriptor.Builder	newBuilder(DataSourceDescriptor prototype)
DataSourceDescriptor.Builder	newBuilderForType()
protected DataSourceDescriptor.Builder	newBuilderForType(com.google.protobuf.GeneratedMessageV3.BuilderParent parent)
protected Object	newInstance(com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter unused)
static DataSourceDescriptor	parseDelimitedFrom(InputStream input)
static DataSourceDescriptor	parseDelimitedFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static DataSourceDescriptor	parseFrom(byte[] data)
static DataSourceDescriptor	parseFrom(byte[] data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static DataSourceDescriptor	parseFrom(com.google.protobuf.ByteString data)
static DataSourceDescriptor	parseFrom(com.google.protobuf.ByteString data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static DataSourceDescriptor	parseFrom(com.google.protobuf.CodedInputStream input)
static DataSourceDescriptor	parseFrom(com.google.protobuf.CodedInputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static DataSourceDescriptor	parseFrom(InputStream input)
static DataSourceDescriptor	parseFrom(InputStream input, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static DataSourceDescriptor	parseFrom(ByteBuffer data)
static DataSourceDescriptor	parseFrom(ByteBuffer data, com.google.protobuf.ExtensionRegistryLite extensionRegistry)
static com.google.protobuf.Parser<DataSourceDescriptor>	parser()
DataSourceDescriptor.Builder	toBuilder()
void	writeTo(com.google.protobuf.CodedOutputStream output)

Methods inherited from class com.google.protobuf.GeneratedMessageV3

canUseUnsafe, computeStringSize, computeStringSizeNoTag, emptyBooleanList, emptyDoubleList, emptyFloatList, emptyIntList, emptyList, emptyLongList, getAllFields, getDescriptorForType, getField, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof, internalGetMapField, internalGetMapFieldReflection, isStringEmpty, makeExtensionsImmutable, makeMutableCopy, makeMutableCopy, mergeFromAndMakeImmutableInternal, mutableCopy, mutableCopy, mutableCopy, mutableCopy, mutableCopy, newBooleanList, newBuilderForType, newDoubleList, newFloatList, newIntList, newLongList, parseDelimitedWithIOException, parseDelimitedWithIOException, parseUnknownField, parseUnknownFieldProto3, parseWithIOException, parseWithIOException, parseWithIOException, parseWithIOException, serializeBooleanMapTo, serializeIntegerMapTo, serializeLongMapTo, serializeStringMapTo, writeReplace, writeString, writeStringNoTag

Methods inherited from class com.google.protobuf.AbstractMessage

findInitializationErrors, getInitializationErrorString, hashBoolean, hashEnum, hashEnumList, hashFields, hashLong, toString

Methods inherited from class com.google.protobuf.AbstractMessageLite

addAll, addAll, checkByteStringIsUtf8, toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface com.google.protobuf.MessageLite

toByteArray, toByteString, writeDelimitedTo, writeTo

Methods inherited from interface com.google.protobuf.MessageOrBuilder

findInitializationErrors, getAllFields, getDescriptorForType, getField, getInitializationErrorString, getOneofFieldDescriptor, getRepeatedField, getRepeatedFieldCount, getUnknownFields, hasField, hasOneof

Field Details

SOURCE_ID_FIELD_NUMBER

public static final int SOURCE_ID_FIELD_NUMBER

See Also:

• Constant Field Values

SOURCE_URL_FIELD_NUMBER

public static final int SOURCE_URL_FIELD_NUMBER

See Also:

• Constant Field Values

SOURCE_TYPE_FIELD_NUMBER

public static final int SOURCE_TYPE_FIELD_NUMBER

See Also:

• Constant Field Values

TENSORS_FIELD_NUMBER

public static final int TENSORS_FIELD_NUMBER

See Also:

• Constant Field Values

METADATA_JSON_FIELD_NUMBER

public static final int METADATA_JSON_FIELD_NUMBER

See Also:

• Constant Field Values

DATA_RESIDENT_FIELD_NUMBER

public static final int DATA_RESIDENT_FIELD_NUMBER

See Also:

• Constant Field Values

Method Details

newInstance

protected Object newInstance(com.google.protobuf.GeneratedMessageV3.UnusedPrivateParameter unused)

Overrides:

newInstance in class com.google.protobuf.GeneratedMessageV3

getDescriptor

public static final com.google.protobuf.Descriptors.Descriptor getDescriptor()

internalGetFieldAccessorTable

protected com.google.protobuf.GeneratedMessageV3.FieldAccessorTable internalGetFieldAccessorTable()

Specified by:

internalGetFieldAccessorTable in class com.google.protobuf.GeneratedMessageV3

getSourceId

public String getSourceId()

 Unique identifier for the data source (flight identifier)
 

string source_id = 1;

Specified by:

getSourceId in interface DataSourceDescriptorOrBuilder

Returns:

The sourceId.

getSourceIdBytes

public com.google.protobuf.ByteString getSourceIdBytes()

 Unique identifier for the data source (flight identifier)
 

string source_id = 1;

Specified by:

getSourceIdBytes in interface DataSourceDescriptorOrBuilder

Returns:

The bytes for sourceId.

getSourceUrl

public String getSourceUrl()

 File path, directory, or remote URL
 

string source_url = 2;

Specified by:

getSourceUrl in interface DataSourceDescriptorOrBuilder

Returns:

The sourceUrl.

getSourceUrlBytes

public com.google.protobuf.ByteString getSourceUrlBytes()

 File path, directory, or remote URL
 

string source_url = 2;

Specified by:

getSourceUrlBytes in interface DataSourceDescriptorOrBuilder

Returns:

The bytes for sourceUrl.

getSourceType

public String getSourceType()

 Source type: "aics", "micromanager", "ome-zarr", "zarr", "hdf5", etc.
 

string source_type = 3;

Specified by:

getSourceType in interface DataSourceDescriptorOrBuilder

Returns:

The sourceType.

getSourceTypeBytes

public com.google.protobuf.ByteString getSourceTypeBytes()

 Source type: "aics", "micromanager", "ome-zarr", "zarr", "hdf5", etc.
 

string source_type = 3;

Specified by:

getSourceTypeBytes in interface DataSourceDescriptorOrBuilder

Returns:

The bytes for sourceType.

getTensorsList

public List<TensorDescriptor> getTensorsList()

 All tensor descriptors in this source
 metadata_json field not populated here (source-level metadata only)
 

repeated .biopb.tensor.TensorDescriptor tensors = 4;

Specified by:

getTensorsList in interface DataSourceDescriptorOrBuilder

getTensorsOrBuilderList

public List<? extends TensorDescriptorOrBuilder> getTensorsOrBuilderList()

 All tensor descriptors in this source
 metadata_json field not populated here (source-level metadata only)
 

repeated .biopb.tensor.TensorDescriptor tensors = 4;

Specified by:

getTensorsOrBuilderList in interface DataSourceDescriptorOrBuilder

getTensorsCount

public int getTensorsCount()

 All tensor descriptors in this source
 metadata_json field not populated here (source-level metadata only)
 

repeated .biopb.tensor.TensorDescriptor tensors = 4;

Specified by:

getTensorsCount in interface DataSourceDescriptorOrBuilder

getTensors

public TensorDescriptor getTensors(int index)

 All tensor descriptors in this source
 metadata_json field not populated here (source-level metadata only)
 

repeated .biopb.tensor.TensorDescriptor tensors = 4;

Specified by:

getTensors in interface DataSourceDescriptorOrBuilder

getTensorsOrBuilder

public TensorDescriptorOrBuilder getTensorsOrBuilder(int index)

 All tensor descriptors in this source
 metadata_json field not populated here (source-level metadata only)
 

repeated .biopb.tensor.TensorDescriptor tensors = 4;

Specified by:

getTensorsOrBuilder in interface DataSourceDescriptorOrBuilder

getMetadataJson

public String getMetadataJson()

 Source-level OME/vendor metadata (JSON format)
 

string metadata_json = 5;

Specified by:

getMetadataJson in interface DataSourceDescriptorOrBuilder

Returns:

The metadataJson.

getMetadataJsonBytes

public com.google.protobuf.ByteString getMetadataJsonBytes()

 Source-level OME/vendor metadata (JSON format)
 

string metadata_json = 5;

Specified by:

getMetadataJsonBytes in interface DataSourceDescriptorOrBuilder

Returns:

The bytes for metadataJson.

hasDataResident

public boolean hasDataResident()

 Advisory, point-in-time hint: this source's content is local and cheap to
 read right now. VOLATILE -- a synced-folder source can re-dehydrate under
 storage pressure, so the authoritative residency gate is a fresh stat
 (adapter.is_resident()), not this stored value. `optional` so absence is
 distinguishable from false: servers predating this field leave it unset
 (residency unknown); a resident local source sets it true, a remote
 (fsspec) source false until its pixels are materialized locally.
 

optional bool data_resident = 6;

Specified by:

hasDataResident in interface DataSourceDescriptorOrBuilder

Returns:

Whether the dataResident field is set.

getDataResident

public boolean getDataResident()

 Advisory, point-in-time hint: this source's content is local and cheap to
 read right now. VOLATILE -- a synced-folder source can re-dehydrate under
 storage pressure, so the authoritative residency gate is a fresh stat
 (adapter.is_resident()), not this stored value. `optional` so absence is
 distinguishable from false: servers predating this field leave it unset
 (residency unknown); a resident local source sets it true, a remote
 (fsspec) source false until its pixels are materialized locally.
 

optional bool data_resident = 6;

Specified by:

getDataResident in interface DataSourceDescriptorOrBuilder

Returns:

The dataResident.

isInitialized

public final boolean isInitialized()

Specified by:

isInitialized in interface com.google.protobuf.MessageLiteOrBuilder

Overrides:

isInitialized in class com.google.protobuf.GeneratedMessageV3

writeTo

public void writeTo(com.google.protobuf.CodedOutputStream output)
             throws IOException

Specified by:

writeTo in interface com.google.protobuf.MessageLite

Overrides:

writeTo in class com.google.protobuf.GeneratedMessageV3

Throws:

IOException

getSerializedSize

public int getSerializedSize()

Specified by:

getSerializedSize in interface com.google.protobuf.MessageLite

Overrides:

getSerializedSize in class com.google.protobuf.GeneratedMessageV3

equals

public boolean equals(Object obj)

Specified by:

equals in interface com.google.protobuf.Message

Overrides:

equals in class com.google.protobuf.AbstractMessage

hashCode

public int hashCode()

Specified by:

hashCode in interface com.google.protobuf.Message

Overrides:

hashCode in class com.google.protobuf.AbstractMessage

parseFrom

public static DataSourceDescriptor parseFrom(ByteBuffer data)
                                      throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static DataSourceDescriptor parseFrom(ByteBuffer data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static DataSourceDescriptor parseFrom(com.google.protobuf.ByteString data)
                                      throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static DataSourceDescriptor parseFrom(com.google.protobuf.ByteString data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static DataSourceDescriptor parseFrom(byte[] data)
                                      throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static DataSourceDescriptor parseFrom(byte[] data,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws com.google.protobuf.InvalidProtocolBufferException

Throws:

com.google.protobuf.InvalidProtocolBufferException

parseFrom

public static DataSourceDescriptor parseFrom(InputStream input)
                                      throws IOException

Throws:

IOException

parseFrom

public static DataSourceDescriptor parseFrom(InputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws IOException

Throws:

IOException

parseDelimitedFrom

public static DataSourceDescriptor parseDelimitedFrom(InputStream input)
                                               throws IOException

Throws:

IOException

parseDelimitedFrom

public static DataSourceDescriptor parseDelimitedFrom(InputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                               throws IOException

Throws:

IOException

parseFrom

public static DataSourceDescriptor parseFrom(com.google.protobuf.CodedInputStream input)
                                      throws IOException

Throws:

IOException

parseFrom

public static DataSourceDescriptor parseFrom(com.google.protobuf.CodedInputStream input,
 com.google.protobuf.ExtensionRegistryLite extensionRegistry)
                                      throws IOException

Throws:

IOException

newBuilderForType

public DataSourceDescriptor.Builder newBuilderForType()

Specified by:

newBuilderForType in interface com.google.protobuf.Message

Specified by:

newBuilderForType in interface com.google.protobuf.MessageLite

newBuilder

public static DataSourceDescriptor.Builder newBuilder()

newBuilder

public static DataSourceDescriptor.Builder newBuilder(DataSourceDescriptor prototype)

toBuilder

public DataSourceDescriptor.Builder toBuilder()

Specified by:

toBuilder in interface com.google.protobuf.Message

Specified by:

toBuilder in interface com.google.protobuf.MessageLite

newBuilderForType

protected DataSourceDescriptor.Builder newBuilderForType(com.google.protobuf.GeneratedMessageV3.BuilderParent parent)

Specified by:

newBuilderForType in class com.google.protobuf.GeneratedMessageV3

getDefaultInstance

public static DataSourceDescriptor getDefaultInstance()

parser

public static com.google.protobuf.Parser<DataSourceDescriptor> parser()

getParserForType

public com.google.protobuf.Parser<DataSourceDescriptor> getParserForType()

Specified by:

getParserForType in interface com.google.protobuf.Message

Specified by:

getParserForType in interface com.google.protobuf.MessageLite

Overrides:

getParserForType in class com.google.protobuf.GeneratedMessageV3

getDefaultInstanceForType

public DataSourceDescriptor getDefaultInstanceForType()

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageLiteOrBuilder

Specified by:

getDefaultInstanceForType in interface com.google.protobuf.MessageOrBuilder